Information for 21-TGRAKGAAMAAGR (Motif 36)

A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G
Reverse Opposite:
G A T C A G T C A C G T A C G T A C T G A C G T A C G T A G T C G T C A C G A T A G C T A G T C C G T A
p-value:1e-7
log p-value:-1.654e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 28.4bp
Average Position of motif in Background28.0 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TGRAKGAAMAAGR
ACTATGAATGAATGAT-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGRAKGAAMAAGR----
-NNAGGGACAAGGGCNC
 A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PB0093.1_Zfp105_1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGRAKGAAMAAGR-
AACAAACAACAAGAG
 A C G T A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGRAKGAAMAAGR-
----GGAACAAAGR
 A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGRAKGAAMAAGR-----
--AATGAACAATGGAATT
 A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGRAKGAAMAAGR----
TCACGGAACAATAGGTG
 A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TGRAKGAAMAAGR--
-----GAACAATGGN
 A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGRAKGAAMAAGR----
NNNNNGAACAATTGANN
 A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGRAKGAAMAAGR-----
-ATAAGAACAAAGGACTA
 A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TGRAKGAAMAAGR---
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C G T A A C G T A C T G C G T A C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A