Information for 21-GAACATTGGCARAGTA (Motif 35)

A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
Reverse Opposite:
A C G T G C T A A G T C G A C T A G C T A C G T A C T G A G T C A G T C C G T A G C T A A C G T A C T G C A G T A C G T A T G C
p-value:1e-7
log p-value:-1.694e+01
Information Content per bp:1.804
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 22.4bp
Average Position of motif in Background55.1 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX21/MA0866.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAACATTGGCARAGTA
-AACAATGGTAGTGTT
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GAACATTGGCARAGTA
-----TTGGCA-----
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAACATTGGCARAGTA
---NNTTGGCANN---
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GAACATTGGCARAGTA
----NTTGGCANN---
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GAACATTGGCARAGTA
----CTTGGCAA----
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAACATTGGCARAGTA
GAACAATTGCAGTGTT
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAACATTGGCARAGTA
GAACAATGGN------
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAACATTGGCARAGTA
GAACAATGG-------
 A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAACATTGGCARAGTA
CAATCACTGGCAGAAT-
 A C G T A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAACATTGGCARAGTA
VRAACAATGG-------
 A C G T A T C G C G T A G C T A A G T C G T C A C A G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A A C T G C A G T C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T