Information for 9-CGCGCTCTGCCAA (Motif 12)

A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G A G T C C G T A A T C G T C G A A C T G A G T C A C T G A G T C C T A G
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.922
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.4 +/- 19.0bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CGCGCTCTGCCAA--
-----GGTGCCAAGT
 A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.66
Offset:7
Orientation:reverse strand
Alignment:CGCGCTCTGCCAA
-------TGCCAA
 A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CGCGCTCTGCCAA-
-----CGTGCCAAG
 A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGCGCTCTGCCAA
GCCGCGCAGTGCGT-
 A C G T A C G T A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:6
Orientation:forward strand
Alignment:CGCGCTCTGCCAA-
------TTGCCAAG
 A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGCGCTCTGCCAA
TGGCACCATGCCAA
 A C G T A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGCGCTCTGCCAA
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CGCGCTCTGCCAA--
------ATGCCAACC
 A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCTCTGCCAA
NTCGCGCGCCTTNNN--
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGCGCTCTGCCAA
CGCCCCCTGACA-
 A G T C A C T G A G T C A C T G A G T C A C G T A T G C C G A T A C T G A G T C A G T C C G T A C G T A
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T