Information for 7-AMTMAAGAGGCSW (Motif 5)

C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T
Reverse Opposite:
C G T A A T C G A C T G A G T C G T A C C G A T A G T C A C G T A C G T A C T G C G T A A C T G A C G T
p-value:1e-11
log p-value:-2.697e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.5 +/- 16.0bp
Average Position of motif in Background64.9 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AMTMAAGAGGCSW
-BTBRAGTGSN--
 C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AMTMAAGAGGCSW-
AAATTCAAGTGGNTTN
 A C G T A C G T C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AMTMAAGAGGCSW-
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AMTMAAGAGGCSW-
AANTTCAAGTGGCTTN
 A C G T A C G T C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AMTMAAGAGGCSW
-CTYRAGTGSY--
 C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AMTMAAGAGGCSW-
AATTTCAAGTGGCTTN
 A C G T A C G T C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AMTMAAGAGGCSW
-NTCAAGTGGN--
 C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.59
Offset:7
Orientation:forward strand
Alignment:AMTMAAGAGGCSW--
-------AGGCCTNG
 C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AMTMAAGAGGCSW
--TTGAGTGSTT-
 C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AMTMAAGAGGCSW
-NTCAAGTGG---
 C G T A G T A C A C G T G T A C C G T A C G T A A C T G C G T A A C T G A C T G A G T C A T G C C G A T
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T