Information for 6-CAAAGTAAAC (Motif 4)

A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C
Reverse Opposite:
A T C G A C G T A C G T A C G T T G C A G A T C A C G T A C G T C A G T T C A G
p-value:1e-14
log p-value:-3.386e+01
Information Content per bp:1.829
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.87%
Number of Background Sequences with motif155.9
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets47.6 +/- 27.8bp
Average Position of motif in Background46.5 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CAAAGTAAAC-
-AAAGTAAACA
 A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CAAAGTAAAC-
-AAAGTAAACA
 A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa2/MA0047.2/Jaspar

Match Rank:3
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CAAAGTAAAC-
NCTAAGTAAACA
 A C G T A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CAAAGTAAAC-----
CAAAGTAAACANNNN
 A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXP2/MA0593.1/Jaspar

Match Rank:5
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CAAAGTAAAC---
--AAGTAAACAAA
 A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T A C G T A C G T
A C G T A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:6
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CAAAGTAAAC----
NCWRWGTAAACANSV
 A C G T A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CAAAGTAAAC-
--AAATAAACA
 A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T
A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAAAGTAAAC-
-WAAGTAAAYA
 A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T
A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAAAGTAAAC---
-TATGTAAACANG
 A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T A C G T A C G T
A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXP1/MA0481.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CAAAGTAAAC----
CAAAAGTAAACAAAG
 A C G T A G T C G T C A T G C A C G T A C T A G A C G T C G T A C G T A G T C A A T G C A C G T A C G T A C G T A C G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G