Information for 5-TCCTSCTSAGAWMARR (Motif 5)

G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
Reverse Opposite:
A G T C A G T C A C G T A C T G C G T A C G A T T G A C G C A T A T G C T C G A T C A G T A G C C G T A C A T G A C T G C T G A
p-value:1e-12
log p-value:-2.968e+01
Information Content per bp:1.642
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif27.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets57.5 +/- 26.7bp
Average Position of motif in Background41.1 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCCTSCTSAGAWMARR
NNTCCTGCTGTGNNN---
 A C G T A C G T G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCCTSCTSAGAWMARR
CCCCCTGCTGTG------
 A C G T A C G T G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCCTSCTSAGAWMARR
TNTCCTGCTGTGNNG---
 A C G T A C G T G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCCTSCTSAGAWMARR
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCCTSCTSAGAWMARR
-CCTGCTGAGH-----
 G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCCTSCTSAGAWMARR
TCNCCTGCTGNGNNN---
 A C G T A C G T G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TCCTSCTSAGAWMARR-
-------CAGATAAGGN
 G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TCCTSCTSAGAWMARR
NNAYTTCCTGHN---------
 A C G T A C G T A C G T A C G T A C G T G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
A T G C A G T C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:TCCTSCTSAGAWMARR-
-------NAGATAAGNN
 G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

Gata4/MA0482.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TCCTSCTSAGAWMARR
-----NNGAGATAAGA
 G A C T A G T C G T A C G A C T A T C G A G T C A C G T A T C G C G T A A C T G C G T A C G A T G T A C G T C A T C A G C T A G
A C G T A C G T A C G T A C G T A C G T T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A