Information for 11-AGCTGCATTTTAT (Motif 19)

C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T
Reverse Opposite:
C G T A A C G T C T G A C G T A C G T A G T C A C G A T A C T G A G T C T C G A A C T G A G T C A C G T
p-value:1e-6
log p-value:-1.508e+01
Information Content per bp:1.932
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.4 +/- 10.8bp
Average Position of motif in Background69.9 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGCTGCATTTTAT------
---TNAATTTTATTACCTN
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AGCTGCATTTTAT------
---NNANTTTTATTGGNNN
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:AGCTGCATTTTAT---
------NTTTTATTGG
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:AGCTGCATTTTAT----
-------TTTTATTRGN
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:AGCTGCATTTTAT---
------NTTTTATGAC
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCTGCATTTTAT--
NNNNNNCTTTTATAN
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:AGCTGCATTTTAT---
-------TTTTATTGC
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCTGCATTTTAT--
NNNNNNCTTTTATAN
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGCTGCATTTTAT------
--NTNAATTTTATTGNATT
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGCTGCATTTTAT------
---NGANTTTTATGGCTCN
 C G T A A C T G A G T C A G C T A C T G A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T