Information for 4-YARCACTTAGKCR (Motif 5)

G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
Reverse Opposite:
A G C T A C T G G T C A A G T C A C G T C G T A C G T A A C T G A C G T C T A G A G T C A C G T C T A G
p-value:1e-13
log p-value:-3.133e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.7 +/- 27.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:YARCACTTAGKCR
-ACCACTTAA---
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:YARCACTTAGKCR
-ACCACTTAA---
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:YARCACTTAGKCR
--GCACTTAA---
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:YARCACTTAGKCR
AAGCACTTAA---
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:YARCACTTAGKCR
MRSCACTYAA---
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:YARCACTTAGKCR
--BCMATTAG---
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---YARCACTTAGKCR-
CATAACCACTTAACAAC
 A C G T A C G T A C G T G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:YARCACTTAGKCR
-NNCAATTANN--
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:YARCACTTAGKCR
-ACCACTTGAA--
 G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---YARCACTTAGKCR-
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T G A T C C G T A C T A G A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A G T C C T G A A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T