Information for 5-AAGTGACCTCTGCCTG (Motif 4)

C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
Reverse Opposite:
A G T C C G T A A C T G A T C G G T A C G T C A A T C G C T G A C T A G A T C G A G C T A T G C G T C A A T G C G C A T G A C T
p-value:1e-15
log p-value:-3.504e+01
Information Content per bp:1.710
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.1 +/- 28.4bp
Average Position of motif in Background44.6 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AAGTGACCTCTGCCTG
---TGACCYCT-----
 C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAGTGACCTCTGCCTG
--CTGACCTTTG----
 C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAGTGACCTCTGCCTG----
--BTGACCTCTNNHTGACCY
 C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AAGTGACCTCTGCCTG
--GTGACCTT------
 C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AAGTGACCTCTGCCTG
---TGACCTYA-----
 C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGACCTCTGCCTG
NNNNTTGACCCCTNNNN-
 A C G T A C G T C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGTGACCTCTGCCTG
CNNTTGACCTTTG----
 A C G T C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAGTGACCTCTGCCTG----
---TGACCTTTGCATGACCT
 C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T T A C G T G C A T G A C G T A C A G C T A G C T G C A T T C A G T A G C C T G A A C G T C T A G T G C A T G A C G T A C A G C T

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGTGACCTCTGCCTG
TGTCGTGACCCCTTAAT-
 A C G T A C G T C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAGTGACCTCTGCCTG
NNNGTGACCTTTGNNN-
 A C G T C T G A C G T A A T C G A C G T A T C G C T G A A T G C A G T C A G C T A T G C A C G T A C T G A T G C G T A C C G A T T A C G
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A A C G T