Information for 9-CATGGCAAGGCTC (Motif 10)

A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
Reverse Opposite:
T C A G G T C A C A T G G T A C A G T C A C G T C A G T A C T G A G T C T G A C G T C A C G A T A C T G
p-value:1e-8
log p-value:-1.913e+01
Information Content per bp:1.694
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif321.2
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets52.7 +/- 29.4bp
Average Position of motif in Background49.3 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATGGCAAGGCTC
ACATGCCCGGGCAT
 A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CATGGCAAGGCTC
TACCATAGCAACGGT-
 A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CATGGCAAGGCTC
GGTTGCCATGGCAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CATGGCAAGGCTC
NGTTGCCATGGCAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CATGGCAAGGCTC
GTTGCCATGGCAAC----
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CATGGCAAGGCTC
CTTGGCAA-----
 A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGCAAGGCTC
ATTTGCATAACAAAG---
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CATGGCAAGGCTC
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

RFX2/MA0600.2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CATGGCAAGGCTC
CGTTGCCATGGCAACG---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T A C G T A C G T

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CATGGCAAGGCTC
CGTTGCCATGGCAACG---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T A C T G T A C G T G A C G T C A G T C A C T A G A C T G G T A C C A G T A G T C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T A C G T A C G T