Information for 4-TYCCATATATGGR (Motif 4)

A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G
Reverse Opposite:
G A T C T A G C A G T C C G T A G A C T C G T A C G A T C G T A C G A T A C T G A C T G T C G A T C G A
p-value:1e-15
log p-value:-3.599e+01
Information Content per bp:1.711
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif63.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets47.7 +/- 14.6bp
Average Position of motif in Background42.3 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0078.1_Srf_1/Jaspar

Match Rank:1
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:TYCCATATATGGR-
TNCCATATATGGNA
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G A C G T
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TYCCATATATGGR
TNCCATATATGG-
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:TYCCATATATGGR
--CCATATATGG-
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G
A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T

SRF/MA0083.3/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TYCCATATATGGR--
TGNCCATATATGGTCA
 A C G T A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

Twist2/MA0633.1/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:TYCCATATATGGR
---NACATATGGN
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G
A C G T A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

Bhlha15/MA0607.1/Jaspar

Match Rank:6
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TYCCATATATGGR
----ACATATGG-
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G
A C G T A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T

Neurog1/MA0623.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TYCCATATATGGR
---ACCATATGGT
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G
A C G T A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TYCCATATATGGR-
----NNATAAGGNN
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G A C G T
A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TYCCATATATGGR-
--CCTTTTATAGNC
 A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0184.1_Tbp_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TYCCATATATGGR
GNNCGCTTAAATCGG
 A C G T A C G T A G C T A G C T T A G C A G T C C G T A G C A T C G T A C G A T C T G A C G A T A C T G A T C G C T A G
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G