Information for 13-ATGGTAATGTCAT (Motif 12)

C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A G T A C C G T A A C G T A C G T C G T A G T A C A G T C C G T A A C G T
p-value:1e-9
log p-value:-2.178e+01
Information Content per bp:1.951
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 27.3bp
Average Position of motif in Background57.7 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATGGTAATGTCAT
TATGCWAATBAV--
 A C G T C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

JUN/MA0488.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGGTAATGTCAT
AAGATGATGTCAT
 C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATGGTAATGTCAT-
AAAGATGATGTCATC
 A C G T C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T
C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGGTAATGTCAT
WATGCAAATGAG--
 A C G T C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATGGTAATGTCAT
TTATGCAAATTA---
 A C G T A C G T C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATGGTAATGTCAT
ATTATGCTAATTT---
 A C G T A C G T A C G T C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATGGTAATGTCAT
TTATGCAAATTA---
 A C G T A C G T C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATGGTAATGTCAT
-NGATGACGTCAT
 C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
A C G T C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T

JDP2(var.2)/MA0656.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATGGTAATGTCAT-
--GATGACGTCATC
 C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C T G T C G A A C G T A C T G C T G A A G T C T C A G A C G T G T A C C T G A A G C T A T G C

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATGGTAATGTCAT
TATGCAAAT-----
 A C G T C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T