Information for 12-TYCTYWGAGAGGK (Motif 11)

C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T
Reverse Opposite:
G T C A A G T C A G T C A C G T A G T C A C G T A G T C C G A T C T A G C G T A A C T G C T G A C G T A
p-value:1e-9
log p-value:-2.283e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.8 +/- 24.3bp
Average Position of motif in Background56.4 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TYCTYWGAGAGGK
NTTTCTNAGAAA---
 A C G T A C G T C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TYCTYWGAGAGGK-
---CTTGAGTGGCT
 C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TYCTYWGAGAGGK-
----TTGAGTGSTT
 C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bcl6/MA0463.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TYCTYWGAGAGGK
TTTCCTAGAAAGCA
 A C G T C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TYCTYWGAGAGGK
---BTBRAGTGSN
 C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TYCTYWGAGAGGK-----
--TGCGGAGTGGGACTGG
 C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

PB0006.1_Bcl6b_1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TYCTYWGAGAGGK
NNNATTCCTCGAAAGN-
 A C G T A C G T A C G T A C G T C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TYCTYWGAGAGGK-
TTTCCTGGAAAGNNN
 A C G T C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T A C G T
G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TYCTYWGAGAGGK
-CCTTTTATAGNC
 C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TYCTYWGAGAGGK
---CTYRAGTGSY
 C G A T A G C T A G T C A C G T A G T C C G T A A C T G C G T A A C T G C G T A A C T G C T A G A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C