Information for 5-KTCAGSACCTTGGMGA (Motif 13)

C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
Reverse Opposite:
A C G T A T G C A C G T A G T C A G T C G T C A T C G A A C T G C T A G A C G T A T C G A G T C A C G T A C T G T C G A G T C A
p-value:1e-10
log p-value:-2.335e+01
Information Content per bp:1.757
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.7 +/- 22.1bp
Average Position of motif in Background50.8 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:KTCAGSACCTTGGMGA-----
TTCAGCACCATGGACAGCGCC
 C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:KTCAGSACCTTGGMGA-----
-TCAGCACCATGGACAGCTCC
 C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

PB0014.1_Esrra_1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-KTCAGSACCTTGGMGA
NNNNATGACCTTGANTN
 A C G T C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Esrra/MA0592.2/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:KTCAGSACCTTGGMGA
---ATGACCTTGAA--
 C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:KTCAGSACCTTGGMGA
----TGACCTTGAV--
 C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:KTCAGSACCTTGGMGA
----TGACCTTGAN--
 C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--KTCAGSACCTTGGMGA
NNGGCGACACCTCNNN--
 A C G T A C G T C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---KTCAGSACCTTGGMGA
SCTGTCARCACC-------
 A C G T A C G T A C G T C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.50
Offset:9
Orientation:forward strand
Alignment:KTCAGSACCTTGGMGA
---------TTGGCA-
 C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---KTCAGSACCTTGGMGA
TGAGTCAGCA---------
 A C G T A C G T A C G T C A G T A G C T A G T C G T C A C T A G A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A T A C G C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T