Information for 1-CCAGGCCAGCGTG (Motif 2)

A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G
Reverse Opposite:
A T G C C G T A T G A C A C T G A G T C A G C T A C T G A C T G A G T C A G T C A C G T A C T G A C T G
p-value:1e-12
log p-value:-2.904e+01
Information Content per bp:1.905
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.6 +/- 16.6bp
Average Position of motif in Background68.5 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAGGCCAGCGTG
CTAGGCCT-----
 A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAGGCCAGCGTG---
GCAGCCAAGCGTGACN
 A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAGGCCAGCGTG--
SCAGYCADGCATGAC
 A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAGGCCAGCGTG
CNAGGCCT-----
 A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCAGGCCAGCGTG
TCCCAGMCRAGCCCC
 A C G T A C G T A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGCCAGCGTG
AAGTTCAAGGTCAGC---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCAGGCCAGCGTG---
-NAGGTCACNNTGACC
 A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G A C G T A C G T A C G T
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCAGGCCAGCGTG
-AAGGCAAGTGT-
 A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCAGGCCAGCGTG----
--AGGTCACCCTGACCT
 A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCAGGCCAGCGTG
NTCAAGGTCA-----
 A C G T A C G T A G T C A G T C G T C A A C T G A C T G A G T C A G T C C T G A A C T G A G T C A C T G A C G T A T C G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T