Information for 6-CCGCCACCAGGCHGGC (Motif 11)

A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
Reverse Opposite:
A T C G A G T C A G T C C A G T A C T G A T G C A G T C C G A T A C T G A T C G A G C T C T A G A C T G A G T C A C T G A C T G
p-value:1e-8
log p-value:-1.947e+01
Information Content per bp:1.818
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.4 +/- 27.2bp
Average Position of motif in Background64.4 +/- 38.7bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCGCCACCAGGCHGGC
-TGCCCCCGGGCA---
 A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CCGCCACCAGGCHGGC
GCCTCCTCCMTCWGACTGKS
 A C G T A C G T A C G T A C G T A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCGCCACCAGGCHGGC
CCGCCCAAGGGCAG--
 A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCGCCACCAGGCHGGC
-TGCCCCAGGGCA---
 A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCGCCACCAGGCHGGC
-CGCCCCCTGACA---
 A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCGCCACCAGGCHGGC
-TGCCCCAGGGCA---
 A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCGCCACCAGGCHGGC
TCACCTCTGGGCAG--
 A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CCGCCACCAGGCHGGC-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCACCAGGCHGGC---
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CCGCCACCAGGCHGGC
------CCAGACAG--
 A G T C G T A C C T A G A G T C A G T C C T G A A T G C A G T C C G T A A C T G A T C G A G T C G C T A A C T G A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T