Information for 7-GGACAGCGTTCAG (Motif 9)

A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G G T C A C G T A A G T C T C A G A G T C A C G T A C T G A C G T G T A C A G T C
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.8 +/- 17.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF1/MA0796.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGACAGCGTTCAG
TGACAGCTGTCA-
 A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGACAGCGTTCAG
TGACAGGTGTCA-
 A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGACAGCGTTCAG
TGACAGCTGTCA-
 A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGACAGCGTTCAG
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGACAGCGTTCAG
AGGGGTCAGAGGTCA-
 A C G T A C G T A C G T A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGACAGCGTTCAG
GAGGTCAAAGGTCA-
 A C G T A C G T A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGACAGCGTTCAG
-CACAGN------
 A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGACAGCGTTCAG
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGACAGCGTTCAG
TGACAGGTGTCA-
 A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGACAGCGTTCAG
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C T G A C T G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A G T C C G T A A C T G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T