Information for 3-TRCTGCACWTTGGAHA (Motif 6)

C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A
Reverse Opposite:
A C G T C T A G A C G T G T A C A T G C G T C A C T G A C G A T A T C G G C A T A C T G G T A C C G T A A C T G G A C T G T C A
p-value:1e-12
log p-value:-2.787e+01
Information Content per bp:1.711
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets54.0 +/- 28.4bp
Average Position of motif in Background54.6 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TRCTGCACWTTGGAHA-----
TTCAGCACCATGGACAGCGCC
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA-----
-TCAGCACCATGGACAGCTCC
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA
-----CCGATTGGCT-
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TRCTGCACWTTGGAHA-
AGAGTGCTGATTGGTCCA
 A C G T C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA---
---TGGACTTTGNNCTNTG
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA
--NTGCCCTTGGGCGN
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A
A C G T A C G T G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA--
------TGATTGGCTANN
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA--
---TGGACTTTGNNCTCN
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA
--CTGACCTTTG----
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TRCTGCACWTTGGAHA
GTCAGCANNTN-----
 C A G T C T A G A G T C C G A T A C T G A G T C C G T A A T G C G C T A A G C T C A G T A T C G A C T G G T C A G A T C C G T A
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T