Information for 20-AAAAAAAAAAAAAAAA (Motif 40)

C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
Reverse Opposite:
A G C T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T C A G T G C A T
p-value:1e-1
log p-value:-3.647e+00
Information Content per bp:1.791
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif71.8
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets34.6 +/- 19.2bp
Average Position of motif in Background48.6 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AAAAAAAAAAAAAAAA
GTTAAAAAAAAAAATTA
 A C G T C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAAAAAAAAAAAAAAA
-AACAAACAACAAGAG
 C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
A C G T G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AAAAAAAAAAAAAAAA
TACTGGAAAAAAAA---
 A C G T C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAAAAAAAAAAAAAAA
AAATAAGAAAAAAC--
 C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAAAAAAAAAA
GTTCAAAAAAAAAATTC-
 A C G T A C G T C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAAAAAAAAAAAAAAA
-CAAAAGTAAACAAAG
 C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
A C G T G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAAAAAAAAAAAAAAA
ATATCAAAACAAAACA
 C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Foxd3/MA0041.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAAAAAAAAAAAAAAA
----AAACAAACATTC
 C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAAAAAAAAAAAAAAA----
AGTAAACAAAAAAGAACANN
 C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A A C G T A C G T A C G T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

PB0186.1_Tcf3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAAAAAAAAAAAAAAA
AGCCGAAAAAAAAAT-----
 A C G T A C G T A C G T A C G T C G T A G T C A T G C A T C G A C T G A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C T G A T C G A T C G A C T G A
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T A C G T A C G T A C G T A C G T A C G T