Information for 6-GTTTATAGGTAAC (Motif 6)

A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
Reverse Opposite:
A T C G A C G T A C G T C G T A A G T C A G T C A G C T C G T A A G C T C G T A C G T A C G T A G T A C
p-value:1e-12
log p-value:-2.798e+01
Information Content per bp:1.911
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.7 +/- 20.9bp
Average Position of motif in Background66.4 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTTTATAGGTAAC
TTTTATKRGG---
 A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATAGGTAAC
NTTTTATTGG----
 A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATAGGTAAC
TTTTTATTGG----
 A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATAGGTAAC-
KGTTGCTAGGMAACA
 A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTTATAGGTAAC
TTTTATTRGN---
 A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATAGGTAAC
NTTTTATTGG----
 A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GTTTATAGGTAAC
NNANTTTTATTGGNNN-
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTTTATAGGTAAC
TATTGTTTATT------
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTTTATAGGTAAC
DGWTTTATGRCN---
 A C G T A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTTTATAGGTAAC
NTGTTTAYATWW---
 A C G T A C G T A C T G A C G T A C G T A C G T C T G A C G A T C T G A A C T G A C T G A C G T G T C A C G T A A T G C
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T A C G T A C G T