Information for 12-GGGCACGCAG (Motif 30)

A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C A C T G A C G T A C T G G T A C A G T C A G T C
p-value:1e-6
log p-value:-1.593e+01
Information Content per bp:1.936
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.2 +/- 17.0bp
Average Position of motif in Background35.5 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GGGCACGCAG
---CACGCA-
 A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGGCACGCAG
TBGCACGCAA
 A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------GGGCACGCAG
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GGGCACGCAG
NGTGGGCAT----
 A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGGCACGCAG
-BGCACGTA-
 A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GGGCACGCAG
--GCACGTNC
 A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGGCACGCAG---
NNGGCCACGCCTTTN
 A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGGCACGCAG
--GCACGTAY
 A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

Hes1/MA1099.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGGCACGCAG-
-GGCACGCGTC
 A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G A C G T
A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGGCACGCAG--
--GCACGTACCC
 A C T G A C T G A C T G A G T C C G T A A G T C A C T G A G T C G T C A A C T G A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C