Information for 9-VAAGGKTTATTTTCAA (Motif 19)

T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A
Reverse Opposite:
G A C T G A C T A T C G G T C A G T C A T C G A G T C A G A C T T C G A C G T A T G A C A G T C G A T C A G C T A C G T A C G T
p-value:1e-9
log p-value:-2.194e+01
Information Content per bp:1.604
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif566.1
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets43.0 +/- 21.5bp
Average Position of motif in Background50.6 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.65
Offset:9
Orientation:forward strand
Alignment:VAAGGKTTATTTTCAA--
---------ATTTGAATT
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.64
Offset:10
Orientation:reverse strand
Alignment:VAAGGKTTATTTTCAA----
----------TTTGAAACCG
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:VAAGGKTTATTTTCAA-
NNNNTTTTTTTTTNAAC
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:VAAGGKTTATTTTCAA
GAATGTTTGTTT----
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:5
Score:0.52
Offset:8
Orientation:forward strand
Alignment:VAAGGKTTATTTTCAA--
--------ATTTTCCATT
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

PB0116.1_Elf3_2/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:VAAGGKTTATTTTCAA-
GNATTTTTTTTTTGANC
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.52
Offset:8
Orientation:forward strand
Alignment:VAAGGKTTATTTTCAA--
--------ATTTTCCATT
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:VAAGGKTTATTTTCAA-
-------TGGTTTCAGT
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:VAAGGKTTATTTTCAA
--AGTTTCAGTTTC--
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A
A C G T A C G T C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C A C G T A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:VAAGGKTTATTTTCAA-----
------TNAGTTTCGATTTTN
 T G C A G T C A C T G A C T A G T C A G A C T G G C A T A G C T C T G A C A G T A G C T A C G T A C G T T A G C C T G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G