Information for 1-CARAGKYCAAAGGYCA (Motif 1)

A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
Reverse Opposite:
A C G T T C A G T C A G G T A C A G T C G A C T G A C T C A G T C T A G T C G A G T A C G A T C G A C T A G T C G A C T T A C G
p-value:1e-113
log p-value:-2.609e+02
Information Content per bp:1.572
Number of Target Sequences with motif180.0
Percentage of Target Sequences with motif23.68%
Number of Background Sequences with motif1256.5
Percentage of Background Sequences with motif2.58%
Average Position of motif in Targets49.6 +/- 23.5bp
Average Position of motif in Background49.6 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.96
Offset:1
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
-AGAGTCCAAAGTCCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
CANAGNNCAAAGTCCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:3
Score:0.89
Offset:2
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
--GAGGTCAAAGGTCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:4
Score:0.87
Offset:2
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
--GAGGTCAAAGGTCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

RXRG/MA0856.1/Jaspar

Match Rank:5
Score:0.87
Offset:2
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
--GGGGTCAAAGGTCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:6
Score:0.86
Offset:2
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
--GGGGTCAAAGGTCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.86
Offset:1
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
-AGGGGTCAGAGGTCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.86
Offset:2
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
--GGGGTCAAAGGTCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.85
Offset:2
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA--
--GGGGTCAAAGTCCAAT
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.84
Offset:2
Orientation:forward strand
Alignment:CARAGKYCAAAGGYCA
--TAGGGCAAAGGTCA
 A T G C C T G A T C A G C T G A C T A G C A T G A G C T A G T C G T C A C T G A C T G A C T A G C A T G A G T C A G T C T G C A
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A