Information for 13-AGGGAGACAA (Motif 27)

C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A
Reverse Opposite:
A C G T A C G T A C T G A G C T A G T C A G C T A G T C G T A C A G T C C G A T
p-value:1e-5
log p-value:-1.363e+01
Information Content per bp:1.831
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif111.5
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets52.4 +/- 28.2bp
Average Position of motif in Background52.3 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGGGAGACAA---
---AAAACAATGG
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGGGAGACAA---
---RNAACAATGG
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGGAGACAA------
-CTCACACAATGGCGC
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AGGGAGACAA----
-----GACAATGNN
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGGGAGACAA---
---AAAACAAAGG
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGGGAGACAA----
----RAACAATGGN
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AGGGAGACAA-
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGGGAGACAA-
--GTAAACAAT
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T
A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGGGAGACAA---
---VRRACAAWGG
 C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGGGAGACAA
AGGTGHCAGACA-
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G C T G A C T A G T C G A A G T C G T C A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T