Information for 6-TGCMCAGCAAGGGGGC (Motif 3)

A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C T A G C A T G C A G T C G T A C A G C T A C G T A C T G A G T C A C G T A C T G A C T G T C A G G A T C T G C A
p-value:1e-13
log p-value:-3.196e+01
Information Content per bp:1.762
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 20.8bp
Average Position of motif in Background64.5 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGCMCAGCAAGGGGGC
-DCHCAGCAGGRGGCC
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGCMCAGCAAGGGGGC
--CACAGCGGGGGGTC
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGCMCAGCAAGGGGGC
--CACAGCAGGGGG--
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGCMCAGCAAGGGGGC
-NCGCAGCGGGGGGTC
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCMCAGCAAGGGGGC
-NCNCAGCGGGGGGTC
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGCMCAGCAAGGGGGC------
-----NNNAAGGGGGCGGGNNN
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCMCAGCAAGGGGGC
TGCCCAGNHW------
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGCMCAGCAAGGGGGC-
-----TGTCAGGGGGCG
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCMCAGCAAGGGGGC
CCACACAGCAGGAGA--
 A C G T A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGCMCAGCAAGGGGGC
-DCTCAGCAGG-----
 A C G T C T A G A G T C G T A C A G T C C G T A A C T G G T A C T G C A C T G A A C T G A C T G A T C G A C T G A C T G A G T C
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T