Information for 8-TGGCAGCAGAGGA (Motif 4)

C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A
p-value:1e-9
log p-value:-2.261e+01
Information Content per bp:1.896
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.9 +/- 27.2bp
Average Position of motif in Background26.4 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGGCAGCAGAGGA
-CACAGCAGGGGG
 C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Myog/MA0500.1/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGGCAGCAGAGGA
-GACAGCTGCAG-
 C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T

SPIB/MA0081.1/Jaspar

Match Rank:3
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TGGCAGCAGAGGA-
-------AGAGGAA
 C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCAGAGGA-
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGCAGAGGA
TTGACAGC------
 A C G T C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
CTTGGCAA-------
 A C G T A C G T C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TGGCAGCAGAGGA
GATATTGACAGCTGCGT-
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TGGCAGCAGAGGA
CCACACAGCAGGAGA
 A C G T A C G T C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
TGAGTCAGCA-----
 A C G T A C G T C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGCAGCAGAGGA
-CGCAGCTGCG--
 C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T