Information for 7-RCATTTCACA (Motif 5)

C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A
Reverse Opposite:
A C G T C T A G C G A T T A C G C G T A C G T A G C T A A G C T A C T G A G C T
p-value:1e-9
log p-value:-2.155e+01
Information Content per bp:1.778
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.44%
Number of Background Sequences with motif195.4
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets52.2 +/- 25.5bp
Average Position of motif in Background46.9 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBR1/MA0802.1/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:RCATTTCACA---
---TTTCACACCT
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:RCATTTCACA-------
NNTTTTCACACCTTNNN
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

EOMES/MA0800.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:RCATTTCACA----
-NTTTTCACACCTT
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX2/MA0688.1/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:RCATTTCACA----
---TTTCACACCTN
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:5
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:RCATTTCACA---
---KTTCACACCT
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

TBX21/MA0690.1/Jaspar

Match Rank:6
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:RCATTTCACA----
----TTCACACCTT
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:RCATTTCACA----
----TTMACACCTT
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:RCATTTCACA----
---CTTCACACCTA
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:RCATTTCACA--
--HTTTCCCASG
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

MGA/MA0801.1/Jaspar

Match Rank:10
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:RCATTTCACA---
-----TCACACCT
 C T G A G T A C T C G A C G A T C G A T A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T