Information for 5-TMTGCTGCCA (Motif 4)

A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G C T A G A G T C C T G A A T C G A G T C C G T A C A T G C G T A
p-value:1e-15
log p-value:-3.567e+01
Information Content per bp:1.877
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.69%
Number of Background Sequences with motif115.1
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets40.2 +/- 27.3bp
Average Position of motif in Background46.7 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1/MA0024.3/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TMTGCTGCCA--
TTTGGCGCCAAA
 A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TMTGCTGCCA-----
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TMTGCTGCCA-----
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TMTGCTGCCA--
---CGTGCCAAG
 A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:TMTGCTGCCA-
-----TGCCAA
 A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

E2F8/MA0865.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TMTGCTGCCA--
TTTCCCGCCAAA
 A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

E2F7/MA0758.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TMTGCTGCCA---
TTTTCCCGCCAAAA
 A C G T A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TMTGCTGCCA-----
---GCCGCCATCTTG
 A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TMTGCTGCCA--
TTTCCCGCCMAV
 A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TMTGCTGCCA--
----TTGCCAAG
 A C G T G T A C A C G T A C T G A T G C A G C T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G