Information for 7-DGAGGTCCAGCAGBGG (Motif 3)

C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G
Reverse Opposite:
A T G C A G T C T G C A A G T C A C G T A T C G A G T C A C G T A C T G A C T G T C G A A G T C G T A C A C G T A G T C G A C T
p-value:1e-13
log p-value:-3.209e+01
Information Content per bp:1.836
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.1 +/- 36.0bp
Average Position of motif in Background14.4 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:DGAGGTCCAGCAGBGG-
-----CACAGCAGGGGG
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:DGAGGTCCAGCAGBGG---
----DCHCAGCAGGRGGCC
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:DGAGGTCCAGCAGBGG---
-----CACAGCGGGGGGTC
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:DGAGGTCCAGCAGBGG-
--CCACACAGCAGGAGA
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:DGAGGTCCAGCAGBGG---
----NCGCAGCGGGGGGTC
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:DGAGGTCCAGCAGBGG------
---TGGCCACCAGGGGGCGCTA
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:DGAGGTCCAGCAGBGG---------
-----GCCASCAGGGGGCGCYVNNG
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.59
Offset:6
Orientation:forward strand
Alignment:DGAGGTCCAGCAGBGG
------NCAGCTGCTG
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:DGAGGTCCAGCAGBGG
----DCTCAGCAGG--
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:DGAGGTCCAGCAGBGG-
--CCACACAGCAGGAGA
 C G T A C T A G C G T A A C T G A C T G A G C T G T A C A G T C C G T A A C T G A T G C C G T A A C T G A C G T A C T G A T C G A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A