Information for 5-GTGCCACMTA (Motif 2)

T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
Reverse Opposite:
G C A T C T G A C A T G A T C G A C G T A C T G A C T G A G T C C G T A A T G C
p-value:1e-25
log p-value:-5.786e+01
Information Content per bp:1.698
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif5.31%
Number of Background Sequences with motif306.7
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets50.7 +/- 25.2bp
Average Position of motif in Background51.0 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GTGCCACMTA
ATGCCAACC-
 T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTGCCACMTA
-TGACACCT-
 T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GTGCCACMTA
-TGTCANYT-
 T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTGCCACMTA
KTTCACACCT-
 A C G T T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTGCCACMTA
GGTGCCAAGT-
 A C G T T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTGCCACMTA
CGTGCCAAG--
 A C G T T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTGCCACMTA---
ACTATGCCAACCTACC
 A C G T A C G T A C G T T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GTGCCACMTA-
--ACCACTTAA
 T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A A C G T
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GTGCCACMTA
-TCACACCT-
 T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
A C G T G A C T T G A C T C G A A G T C T G C A G T A C A G T C G A C T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTGCCACMTA
-TCACACCT-
 T A C G C G A T T C A G T G A C G T A C G T C A T A G C G T A C G A C T C G T A
A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T A C G T