Information for 1-RCCACYAGGGGGCRST (Motif 1)

C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T
Reverse Opposite:
C T G A A T C G G A T C C T A G T G A C A G T C G T A C A G T C A G T C G C A T C T G A T A C G G C A T A C T G T C A G G A T C
p-value:1e-623
log p-value:-1.436e+03
Information Content per bp:1.597
Number of Target Sequences with motif447.0
Percentage of Target Sequences with motif53.99%
Number of Background Sequences with motif544.7
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets52.9 +/- 17.6bp
Average Position of motif in Background48.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:RCCACYAGGGGGCRST----
GCCASCAGGGGGCGCYVNNG
 C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--RCCACYAGGGGGCRST-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--RCCACYAGGGGGCRST--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:RCCACYAGGGGGCRST---
--NNNAAGGGGGCGGGNNN
 C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-RCCACYAGGGGGCRST
NCNCAGCGGGGGGTC--
 A C G T C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RCCACYAGGGGGCRST
DCHCAGCAGGRGGCC--
 A C G T C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:RCCACYAGGGGGCRST
CACAGCAGGGGG----
 C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RCCACYAGGGGGCRST
CACAGCGGGGGGTC--
 C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:RCCACYAGGGGGCRST
---AACAGATGGC---
 C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RCCACYAGGGGGCRST
NCGCAGCGGGGGGTC--
 A C G T C T A G A G T C A G T C C G T A A T G C G A C T C G T A A C T G C T A G C A T G C T A G A C T G G A T C C T A G T A G C G A C T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T