Information for 2-KAWWKSRACWAARCAT (Motif 2)

A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G C T A C G T A C G T C G A T A C T G A C G T A G C T A T C G G T C A C G A T G C A T A C G T G T A C
p-value:1e-13
log p-value:-3.062e+01
Information Content per bp:1.808
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.6 +/- 16.4bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:KAWWKSRACWAARCAT----
---AACACCAAAACAAAGGA
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:KAWWKSRACWAARCAT--
-AGAAGAACAAAGGACTA
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T A C G T A C G T
A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:KAWWKSRACWAARCAT--
-ATAAGAACAAAGGACTA
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:KAWWKSRACWAARCAT
------AAATAAACA-
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:KAWWKSRACWAARCAT--
------AAACAAACATTC
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:KAWWKSRACWAARCAT
----GGAACAAAGR--
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:KAWWKSRACWAARCAT-
-AAACAGACAAAGGAAT
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Foxq1/MA0040.1/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:KAWWKSRACWAARCAT--
-------AATAAACAATN
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:KAWWKSRACWAARCAT
----VRRACAAWGG--
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

FOXD1/MA0031.1/Jaspar

Match Rank:10
Score:0.54
Offset:8
Orientation:forward strand
Alignment:KAWWKSRACWAARCAT
--------GTAAACAT
 A C T G C G T A C G T A C G T A A C G T A T G C C T G A C G T A A G T C C G T A G T C A C G T A C T G A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T C A C G T A T C G A G A T C C G T A C G A T