Information for 6-CCTGAGAGAC (Motif 15)

A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G A C T G
p-value:1e-3
log p-value:-9.160e+00
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets76.0 +/- 8.0bp
Average Position of motif in Background59.0 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTGAGAGAC-
CTTGAGTGGCT
 A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCTGAGAGAC-
AGGTGHCAGACA
 A C G T A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTGAGAGAC---
-BTGABTGACAGS
 A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTGAGAGAC---
-NTGATTGACAGN
 A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCTGAGAGAC--
AGGTGNCAGACAG
 A C G T A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGAGAGAC--
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGAGAGAC----
--TGAGTGACAGSC
 A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTGAGAGAC--
GGTTAGAGACCT
 A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTGAGAGAC-----
CTACTTGGATACGGAAT
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTGAGAGAC
CSTGGGAAAD
 A G T C A G T C A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A