Information for 8-CTGGCCACAA (Motif 12)

T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A
Reverse Opposite:
A G C T A G C T A C T G A G C T A C T G A C T G A G T C A T G C C G T A A T C G
p-value:1e-9
log p-value:-2.202e+01
Information Content per bp:1.843
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.98%
Number of Background Sequences with motif126.8
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets53.2 +/- 25.0bp
Average Position of motif in Background46.2 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTGGCCACAA--
NWAACCACADNN
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGGCCACAA--
-AAACCACAGAN
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A A C G T A C G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGGCCACAA
NAAACCACAG
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGGCCACAA-
-AAACCACAGC
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTGGCCACAA
WDNCTGGGCA---
 A C G T A C G T A C G T T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGGCCACAA-
-AAACCACANN
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A A C G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTGGCCACAA
SCCTAGCAACAG
 A C G T A C G T T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RUNX3/MA0684.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGGCCACAA-
-AAACCGCAAA
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A A C G T
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGGCCACAA
-TGACCTYA-
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGGCCACAA
CTGCCCGCA-
 T A G C A C G T A T C G C T A G A G T C A G T C C T G A T G A C C T G A T C G A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T