Information for 6-CAGGGTGGCTGTT (Motif 6)

T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T
Reverse Opposite:
T C G A T G C A A T G C C G T A A C T G A T G C A T G C C G T A A T G C G T A C A G T C A G C T A T C G
p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.792
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif77.4
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets66.0 +/- 26.3bp
Average Position of motif in Background48.9 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAGGGTGGCTGTT---
-GGNGCGNCTGTTNNN
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Myb/MA0100.2/Jaspar

Match Rank:2
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CAGGGTGGCTGTT--
-----TGGCAGTTGN
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:3
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAGGGTGGCTGTT--
-----TGGCAGTTGG
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CAGGGTGGCTGTT
-------GCTGTG
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CAGGGTGGCTGTT
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAGGGTGGCTGTT
----TWGTCTGV-
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CAGGGTGGCTGTT-----
--NNNTGGCAGTTGGTNN
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGGGTGGCTGTT
GTCACGCTCNCTGA-
 A C G T A C G T T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CAGGGTGGCTGTT
--VBSYGTCTGG-
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

YY1/MA0095.2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CAGGGTGGCTGTT
CAAGATGGCGGC-
 T A G C C T G A A C T G A C T G A T C G A C G T A T C G T A C G T G A C A C G T A T C G A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T