Information for 2-CCCACAGGGAGSAGGA (Motif 4)

A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
Reverse Opposite:
A G C T A T G C G T A C C A G T A T C G A G T C A G C T A G T C G T A C A T G C G A C T A C T G C G A T A C T G A C T G A C T G
p-value:1e-12
log p-value:-2.876e+01
Information Content per bp:1.763
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.0 +/- 25.6bp
Average Position of motif in Background47.3 +/- 12.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCACAGGGAGSAGGA
AAACCACAGAN-------
A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCACAGGGAGSAGGA
NWAACCACADNN-------
A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCCACAGGGAGSAGGA
TCCCCTGGGGAC----
A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCCACAGGGAGSAGGA
YCCGCCCACGCN--------
A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCCACAGGGAGSAGGA
AAACCACAGC--------
A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCCACAGGGAGSAGGA
TGCCCNNAGGGCA-----
A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCCACAGGGAGSAGGA
WTGSCCTSAGGS-------
A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCACAGGGAGSAGGA
GCCTCAGGGCAT----
A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCCACAGGGAGSAGGA
TGCCCTNAGGGCA-----
A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCCACAGGGAGSAGGA
NAAACCACAG---------
A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A A T C G C A T G A C T G T C G A T C A G A T G C G T C A A C T G T A C G C T G A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T