Information for 9-CTYTWGARTTRTG (Motif 13)

A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C C G T A G T C A A G C T A C G T A G T C C G T A C G T A C T A G C G T A A T C G
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.875
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 28.6bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTYTWGARTTRTG--
----TGATTTATGGC
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTYTWGARTTRTG---
----TGATTTATGGCC
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTYTWGARTTRTG-----
----AAAATTGTTATGAA
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTYTWGARTTRTG
---TTGACTTTT-
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G
A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTYTWGARTTRTG---
----TGATTTATGGCC
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTYTWGARTTRTG---
----TGAATTATGCAT
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTYTWGARTTRTG-
NNNTATTGAATTGNNN
 A C G T A C G T A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTYTWGARTTRTG
-ATTTGAATT---
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTYTWGARTTRTG---
---NTGATTTATGGCC
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0176.1_Sox5_2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTYTWGARTTRTG---
-NNCTNAATTATGANN
 A T G C A C G T A G T C A C G T C G A T A C T G C G T A C T G A A C G T A C G T C T A G A C G T A C T G A C G T A C G T A C G T
A C G T G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A