Information for 4-TGCCSGAGTACTT (Motif 3)

A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T
Reverse Opposite:
T G C A C T G A A T C G A C G T G T C A A G T C A C G T A T G C A T G C A C T G C T A G A G T C G T C A
p-value:1e-13
log p-value:-3.150e+01
Information Content per bp:1.733
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.7 +/- 28.1bp
Average Position of motif in Background43.4 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGCCSGAGTACTT-----
-TTCNAAGTACTTNNNNN
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCCSGAGTACTT-----
-TACTAAGTACTTAAATG
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGCCSGAGTACTT--
-----AAGCACTTAA
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGCCSGAGTACTT-----
-TTTTAAGTACTTAAATT
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGCCSGAGTACTT----
-CNTTAAGTACTTAANG
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TGCCSGAGTACTT----
NNNNTGAGCACTGTNNG
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.49
Offset:7
Orientation:forward strand
Alignment:TGCCSGAGTACTT---
-------CCACTTGAA
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PB0094.1_Zfp128_1/Jaspar

Match Rank:8
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TGCCSGAGTACTT---
TCTTTGGCGTACCCTAA
 A C G T A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

PH0024.1_Dlx5/Jaspar

Match Rank:9
Score:0.48
Offset:4
Orientation:forward strand
Alignment:TGCCSGAGTACTT-------
----GGGGTAATTAGCTCTG
 A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---TGCCSGAGTACTT
ACATGCCCGGGCAT--
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C A T C G A T C G T C G A C T A G A C G T C G T A A T G C A G C T A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T A C G T A C G T