Information for 15-AGTCGGACAA (Motif 23)

G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A
Reverse Opposite:
A C G T A C G T A C T G A G C T A G T C A G T C C T A G C G T A A G T C A C G T
p-value:1e-7
log p-value:-1.739e+01
Information Content per bp:1.858
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif32.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets56.6 +/- 24.0bp
Average Position of motif in Background54.0 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AGTCGGACAA-
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T A C G T A C G T G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

HOXD12/MA0873.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGTCGGACAA-
AGTCGTAAAAA
 G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC12/MA0906.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGTCGGACAA-
GGTCGTAAAAA
 G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGTCGGACAA--
TGTCTGDCACCT
 G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGTCGGACAA----
-----GACAATGNN
 G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGTCGGACAA---
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGTCGGACAA----
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGTCGGACAA---
---VRRACAAWGG
 G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGTCGGACAA---
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGTCGGACAA
TATAAGTAGGTCAA
 A C G T A C G T A C G T A C G T G T C A A C T G G C A T A G T C A C T G A C T G C T G A A G T C G T C A T C G A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A