Information for 9-ACAAAAGHATGAC (Motif 9)

C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
Reverse Opposite:
A C T G A G C T G A T C C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C T G A C G T
p-value:1e-12
log p-value:-2.881e+01
Information Content per bp:1.888
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.4 +/- 30.0bp
Average Position of motif in Background47.0 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAAGHATGAC
AAAACAAAGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACAAAAGHATGAC
RACAAWGG------
 A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ACAAAAGHATGAC
AAACAGACAAAGGAAT---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ACAAAAGHATGAC
AGAAGAACAAAGGACTA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAAGHATGAC
RNAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACAAAAGHATGAC
AACAAAGG------
 A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------ACAAAAGHATGAC
ATAAGAACAAAGGACTA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ACAAAAGHATGAC
RAACAATGGN-----
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAAGHATGAC
VRRACAAWGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACAAAAGHATGAC
GAACAATGGN-----
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A C T A G G A C T C G T A A C G T C T A G C T G A A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T