Information for 8-TKGCMGSCTGSCA (Motif 8)

C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A
Reverse Opposite:
A C G T A C T G A T C G A G T C C G T A A C T G A T G C A G T C A C T G A C T G A G T C G T A C G C T A
p-value:1e-13
log p-value:-3.053e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.5 +/- 29.2bp
Average Position of motif in Background83.1 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TKGCMGSCTGSCA
CTGGCAGNCTGCCA
 A C G T C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TKGCMGSCTGSCA
TTGGCATGGTGCCA
 A C G T C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TKGCMGSCTGSCA--
TTGGCANNNTGCCAAG
 A C G T C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:TKGCMGSCTGSCA-
------CTTGGCAA
 C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TKGCMGSCTGSCA----
-NGTAGGTTGGCATNNN
 C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:TKGCMGSCTGSCA--
-----VGCTGWCAVB
 C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TKGCMGSCTGSCA---
---CTGTCTGTCACCT
 C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:TKGCMGSCTGSCA-
------GCTGTCAA
 C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TKGCMGSCTGSCA---
----TGTCTGDCACCT
 C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TKGCMGSCTGSCA-
-----GGTTGGCAT
 C A G T A C T G A C T G A G T C G T A C A C T G A T C G A G T C A C G T A C T G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T