Information for 3-CCACCAGAGGGCA (Motif 3)

T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A
Reverse Opposite:
G A C T A C T G A G T C A G T C G T A C A G C T A G T C G A C T C A T G C A T G A G C T T A C G A C T G
p-value:1e-20
log p-value:-4.727e+01
Information Content per bp:1.771
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif53.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets52.4 +/- 22.0bp
Average Position of motif in Background49.2 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGAGGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGAGGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGAGGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCACCAGAGGGCA-
TCACCTCTGGGCAG
 T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCACCAGAGGGCA-
CCGCCCAAGGGCAG
 T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCACCAGAGGGCA
--AACAGATGGC-
 T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CCACCAGAGGGCA-
----CAAAGGTCAG
 T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCACCAGAGGGCA-----
-NNNAAGGGGGCGGGNNN
 T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCACCAGAGGGCA-
-----TNNGGGCAG
 T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCACCAGAGGGCA-
--GCCTCAGGGCAT
 T A G C A G T C C T G A G A T C G A T C C G T A C T A G C T G A A C T G A C T G C T A G G T A C C T G A A C G T
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T