Information for 4-TTCCACAGCYTGGTGA (Motif 11)

C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
Reverse Opposite:
G A C T A G T C C G T A A T G C A G T C G T C A C T A G A T C G A G T C A C G T C T A G C G A T C T A G C T A G C G T A C G T A
p-value:1e-11
log p-value:-2.639e+01
Information Content per bp:1.782
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.5 +/- 23.0bp
Average Position of motif in Background40.6 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTCCACAGCYTGGTGA
---CACAGCAGGGGG-
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTCCACAGCYTGGTGA
---CACAGN-------
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTCCACAGCYTGGTGA
GAGCACAGCAGGACA-
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTCCACAGCYTGGTGA
--DCTCAGCAGG----
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTCCACAGCYTGGTGA----
ANTTMRCASBNNNGTGYKAAN
 A C G T C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A A C G T A C G T A C G T A C G T
C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TTCCACAGCYTGGTGA-
--DCHCAGCAGGRGGCC
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

SPDEF/MA0686.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TTCCACAGCYTGGTGA
---TACATCCGGGT--
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
A C G T A C G T A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TTCCACAGCYTGGTGA
CCACACAGCAGGAGA-
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------TTCCACAGCYTGGTGA
GAGCCTGGTACTGWGCCTGR---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T A C G T

TBX19/MA0804.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTCCACAGCYTGGTGA----
TTTCACACCTAGGTGTGAAN
 C G A T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A G T C A C G T A C T G A T C G A C G T C T A G C T G A A C G T A C G T A C G T A C G T
C G A T C G A T G A C T T G A C C T G A G A T C T C G A G A T C T G A C G A C T C G T A A C T G C T A G A G C T T C A G G A C T A C T G C T G A G T C A G C T A