Information for 2-ATAAAATGTTGGT (Motif 6)

C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
Reverse Opposite:
C T G A A G T C G T A C C T G A C G T A A G T C C T G A A C G T A C G T A C G T A C G T G T C A A C G T
p-value:1e-10
log p-value:-2.383e+01
Information Content per bp:1.849
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 15.7bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATGTTGGT
AATGCAATAAAATTTAT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATAAAATGTTGGT
GTCATAAAAN------
 A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATGTTGGT
CTACCAATAAAATTCT---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATAAAATGTTGGT
CCAATAAAAA------
 A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ATAAAATGTTGGT
NCYAATAAAA-------
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATAAAATGTTGGT--
---GAATGTTTGTTT
 C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T A C G T A C G T
A C G T A C G T A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAATGTTGGT
AAGCCATAAAA-------
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATAAAATGTTGGT--
GGAAAAATTGTTAGGAA
 A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------ATAAAATGTTGGT
AAAGGTAATAAAATTT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAATGTTGGT
CCYMATAAAA-------
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A G T C A C G T A C G T A A G C T A C T G A C G T A G C T A C T G C T A G A G C T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T