Information for 4-AHTAAACATTATGTCT (Motif 8)

C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C C G T A A C G T C T G A C G T A A G C T A C T G C G A T A G C T A G C T C T G A C A G T A C G T
p-value:1e-13
log p-value:-3.114e+01
Information Content per bp:1.825
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.2 +/- 27.3bp
Average Position of motif in Background48.6 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxq1/MA0040.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AHTAAACATTATGTCT
AATAAACAATN-----
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AHTAAACATTATGTCT
AAACAAACATTC-----
 A C G T C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:10
Orientation:forward strand
Alignment:AHTAAACATTATGTCT--
----------CTGTCTGG
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AHTAAACATTATGTCT
AAATAAACA--------
 A C G T C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:AHTAAACATTATGTCT-------
------NNTNNTGTCTGGNNTNG
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AHTAAACATTATGTCT--
---GAACADWATGTTCTT
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

FOXG1/MA0613.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AHTAAACATTATGTCT
-GTAAACAA-------
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T
A C G T C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:10
Orientation:forward strand
Alignment:AHTAAACATTATGTCT--
----------TWGTCTGV
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:8
Orientation:forward strand
Alignment:AHTAAACATTATGTCT--
--------VBSYGTCTGG
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AHTAAACATTATGTCT
-VAGRACAKNCTGTBC
 C G T A G C T A A G C T C T G A C T G A C G T A G T A C C T G A C G A T A G C T T G C A A C G T A C T G C G A T A G T C A C G T
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C