Information for 7-CAAGGATCAA (Motif 13)

A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A
Reverse Opposite:
C G A T A C G T C A T G G C T A A G C T T A G C A G T C A G C T A G C T C T A G
p-value:1e-10
log p-value:-2.401e+01
Information Content per bp:1.832
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif153.1
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets53.9 +/- 26.3bp
Average Position of motif in Background49.5 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CAAGGATCAA
--NGGATTAN
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

Tcf7/MA0769.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAAGGATCAA---
-AAAGATCAAAGG
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A A C G T A C G T A C G T
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAAGGATCAA------
-AAAGATCAAAGGGTT
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAAGGATCAA-------
-GAAGATCAATCACTTA
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAAGGATCAA-
-VRGGATTARN
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAAGGATCAA---
---DGATCRATAN
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAAGGATCAA
--NGGATTAA
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAAGGATCAA-----
NANAGGGATTAATTATN
 A C G T A C G T A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAAGGATCAA-----
TGAAGGGATTAATCATC
 A C G T A C G T A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CAAGGATCAA
--GGGATTAA
 A G T C C T G A C T G A C T A G A T C G C T G A C G A T G T A C C G T A C G T A
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A