Information for 6-CTGGCAGGCAGGC (Motif 7)

A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G T A G C A G T C A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C C G T A A C T G
p-value:1e-13
log p-value:-3.127e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 18.7bp
Average Position of motif in Background93.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGCAGGC-
CTGGCAGNCTGCCA
 A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGGCAGGCAGGC---
TTGGCANNNTGCCAAG
 A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGGCAGGCAGGC--
-TGGCACCATGCCAA
 A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCAGGC
CTTGGCAA------
 A C G T A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTGGCAGGCAGGC-----
---SCAGYCADGCATGAC
 A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGCAGGC
CWGGCGGGAA---
 A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGGCAGGC
AGGTGNCAGACAG--
 A C G T A C G T A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGCAGGC
TTGGCA-------
 A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAGGCAGGC
GGTCTGGCAT------
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCAGGC
NTTGGCANN-----
 A C G T A G T C A C G T A C T G A C T G G T A C C G T A A C T G A C T G G T A C C G T A A C T G A C T G A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T