Information for 9-GGCAAAGTCAACA (Motif 11)

A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T A C G T C T A G C G T A A T G C C G A T A C G T A C G T A C T G A G T C G T A C
p-value:1e-10
log p-value:-2.471e+01
Information Content per bp:1.830
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.2 +/- 22.0bp
Average Position of motif in Background52.1 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2/MA0047.2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GGCAAAGTCAACA
-NCTAAGTAAACA
 A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GGCAAAGTCAACA---
-NCWRWGTAAACANSV
 A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAAGTCAACA--
TGCCAAAATAAACANN
 A C G T A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGCAAAGTCAACA
--AAAAGTCAA--
 A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGCAAAGTCAACA----
--CAAAGTAAACANNNN
 A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGCAAAGTCAACA--
GGCAAAAGTCCAATAA
 A C G T A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGCAAAGTCAACA
---AAAGTAAACA
 A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGCAAAGTCAACA
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

FOXC2/MA0846.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGCAAAGTCAACA--
---TAAGTAAACAAA
 A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GGCAAAGTCAACA--
---TATGTAAACANG
 A C T G C T A G T G A C C G T A C G T A C G T A T A C G A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G