Information for 8-KKDTTWATDG (Motif 11)

A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G
Reverse Opposite:
A T G C G A C T G C T A G C A T C G A T G T C A G T C A G T C A G T C A T G A C
p-value:1e-8
log p-value:-1.861e+01
Information Content per bp:1.467
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.43%
Number of Background Sequences with motif427.9
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets61.9 +/- 23.2bp
Average Position of motif in Background52.2 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:KKDTTWATDG--
--TTTAATTGCN
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G A C G T A C G T
A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:KKDTTWATDG-
-TTTTATKRGG
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:KKDTTWATDG
NTTTTATTGG
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:KKDTTWATDG
TTTTTATTGG
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:KKDTTWATDG
NTTTTATTGG
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---KKDTTWATDG---
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:KKDTTWATDG-
-TTTTATTRGN
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:KKDTTWATDG-
-TTTTTATTGC
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G A C G T
A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:KKDTTWATDG-
---CTAATKGV
 A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

PH0063.1_Hoxb8/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KKDTTWATDG-----
TTTATTAATTGCNNGN
 A C G T A C T G C A G T C A G T C A G T C A G T G C T A C G T A C G A T C T G A T A C G A C G T A C G T A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T