Information for 1-YCCTGRAGTGKWTSMA (Motif 7)

G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
Reverse Opposite:
A C G T A C G T A T G C C G T A C G A T G T A C A G T C C G T A A G T C A C G T A G C T A G T C C G T A A C T G A C T G C T G A
p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.839
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 22.8bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:YCCTGRAGTGKWTSMA
--CTYRAGTGSY----
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:YCCTGRAGTGKWTSMA
--BTBRAGTGSN----
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:YCCTGRAGTGKWTSMA
---TTRAGTGSYK---
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:YCCTGRAGTGKWTSMA
--NTCAAGTGG-----
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:YCCTGRAGTGKWTSMA
---TTGAGTGSTT---
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YCCTGRAGTGKWTSMA
--NTCAAGTGGN----
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YCCTGRAGTGKWTSMA
--CTTGAGTGGCT---
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YCCTGRAGTGKWTSMA
NTNNTTAAGTGGNTNAN
 A C G T G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Gabpa/MA0062.2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YCCTGRAGTGKWTSMA
-CCGGAAGTGGC----
 G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
A C G T T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C A C G T A C G T A C G T A C G T

ELF4/MA0641.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--YCCTGRAGTGKWTSMA
AACCCGGAAGTG------
 A C G T A C G T G A C T A G T C A G T C A C G T C T A G C T G A C G T A A C T G C G A T A C T G A C T G C G T A A C G T A T C G G T C A C G T A
C G T A G C T A G T A C T A G C T G A C C T A G A C T G C G T A G T C A T C A G A G C T C T A G A C G T A C G T A C G T A C G T A C G T A C G T